Stem-loop mtr-MIR2652h

Accession

MI0011978

Description

Medicago truncatula mtr-MIR2652h precursor miRNA

Sequence

ugcgguuaugguguauaaggaaaucuuuaugcacccugcauaaauucagaaaugauuuuggaguacaacacacagaaaccauuuccauagcaaaauaguuuuggcauaauuuuauguaaggugcugaaaauccuuaugcagggugcuggaaaccauuaaguacaucuaaugguuuugaaguacaacucacagaaaccauuuccggauuUAUGCAGGGUGCAUAAGGAUUccuuaugcaccauaaccgc
.(((((((((((((((((((((.((((((((((((((((((((((((.((((((.(((((((((........(((..(((....(((.(((......))).)))((((....))))...))).))).....(((.....)))(((((.((((((((((........))))))))))..))))).)))).)))))..)))))).)))))))))))))))))))))))))))))))))))))))))))))

Structure

u                     a                        a      -a     -    acaacacacagaaaccauuuccauagcaaaauaguuuuggcauaauuuuauguaaggugcugaaaauccuuaugcagg     -g          agu 
 gcgguuaugguguauaaggaa ucuuuaugcacccugcauaaauuc gaaaug  uuuug gagu                                                                              gugcu  gaaaccauua   a
 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||||| ||||                                                                              |||||  ||||||||||    
 cgccaauaccacguauuccUU AGGAAUACGUGGGACGUAUuuagg cuuuac  aagac cuca                                                                              cauga  uuuugguaau   c
-                     -                        c      ca     a    -----------------------------------------------------------------------------a     ag          cua 

Annotation confidence Not enough data

Genome context

chr5: 7029666-7029913 [+]

Mature mtr-miR2652h

• Accession: MIMAT0013431
• Description: Medicago truncatula mtr-miR2652h mature miRNA
• Sequence: 209 - UAUGCAGGGUGCAUAAGGAUU - 229
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796