Stem-loop mtr-MIR2652i

Accession

MI0011979

Description

Medicago truncatula mtr-MIR2652i precursor miRNA

Sequence

gcgguuauggugcauaagaaaauccuuaugcacccugcauaaauccagaaaugguuuuggaguacaacucacagaaaccauuuccacaguaaaaugguuuuggcauaauuggguugggauuuaugcaaggugcuggaaaucauuaaguacaucuaaugguuuugaaguacaacucacaaaaaccauuucugaauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.(((((((((((((((((.(((((((((((((((((((((((((.((((((((((((((((((.(((((((..((((((((((........))))))))))........))))))).............(((((.((((((((((........))))))))))..))))).)))).).))))))))))))).))))))))))))))))))))))))).)))))))))))))))))

Structure

g                 a                         c             - -    ------------------------------------------------------a       ------ca          cca 
 cgguuauggugcauaag aaauccuuaugcacccugcauaaau cagaaaugguuuu g gagu                                                       caacuca        gaaaccauuu   c
 ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||                                                       |||||||        ||||||||||    
 gccaauaccacguauuc uUUAGGAAUACGUGGGACGUAUuua gucuuuaccaaaa c cuca                                                       guugggu        uuuugguaaa   a
-                 c                         a             a a    acaugaaguuuugguaaucuacaugaauuacuaaaggucguggaacguauuuagg       uaauacgg          aug 

Annotation confidence Not enough data

Genome context

chr6: 21529035-21529269 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2652i

Mature mtr-miR2652i

• Accession: MIMAT0013432
• Description: Medicago truncatula mtr-miR2652i mature miRNA
• Sequence: 196 - UAUGCAGGGUGCAUAAGGAUU - 216
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796