Stem-loop mtr-MIR2654

Accession

MI0011986

Description

Medicago truncatula mtr-MIR2654 precursor miRNA

Sequence

2094 reads, 19.0 reads per million, 110 experiments

uugauugagauaugacaaAUUCAGGGACAAAGUGUGCGuuucgauaaauugggggacauuuuuguccgauucgugcAAAUUCAGGGACGAAUUUGgauauucacucua
......(((...(((...(((((.(((((((((((.(.((..........)).).))).))))))))(((((((.(........).))))))))))))..))))))..

Structure

uugauu   aua   caa     GGGACAAAGUGUGCGuuucgauaaauugggggacauuuuugucc       g AAA 
      gag   uga   AUUCA                                            gauucgu c   U
      |||   |||   |||||                                            ||||||| |    
      cuc   acu   uagGU                                            UUAAGCA G   U
----au   ---   -ua     --------------------------------------------       G GAC 

Annotation confidence Low

Genome context

chr3: 31151589-31151696 [+]

Mature mtr-miR2654-5p

• Accession: MIMAT0013439
• Description: Medicago truncatula mtr-miR2654-5p mature miRNA
• Sequence: 19 - AUUCAGGGACAAAGUGUGCG - 38
• Evidence: experimental ; 454 [1]

Mature mtr-miR2654-3p

• Accession: MIMAT0054951
• Description: Medicago truncatula mtr-miR2654-3p mature miRNA
• Sequence: 77 - AAAUUCAGGGACGAAUUUG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796