miRBase entry: mtr-MIR2655b

Stem-loop mtr-MIR2655b


Accession
MI0011988
Description
Medicago truncatula mtr-MIR2655b precursor miRNA


Sequence

15438 reads, 154.0 reads per million, 111 experiments
cCGUUUUGGUCCCUUAACUUUAuugaaaguaucgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaauuuugaucccuuaucuuauuuaauuaguauuaguuuggucccuuaacuuauuuaauuaguauuaguuuggucccuaaacuuaacguuuuuuugaauuaaauuaacauaaagaucaaaccgauacuuuaaAUAAAGUUAAGGGACCUAAAC
..((((.(((((((((((((((((.(((((((((((((((((.(((.(((((((((((((((((((((((((((.(((.((((.............((((((((((((((..................)))))))))))))).))))...))).))))))))))))))))))))))))))).)))))))))))))))))))).))))))))))))))))).))))

Structure
cC    U                 g                 c   c                           a   --u    ccuuaucuuauuu              uggucccu 
  GUUU GGUCCCUUAACUUUAuu aaaguaucgguuugguc uuu uguuaauuuaauucaaaaaaacguuaa uuu   gauc             aauuaguauuaguu        u
  |||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||   ||||             ||||||||||||||         
  CAAA CCAGGGAAUUGAAAUAa uuucauagccaaacuag aaa acaauuaaauuaaguuuuuuugcaauu aaa   cugg             uugauuaugauuaa        a
--    U                 a                 -   u                           c   ucc    ------------u              uuuauuca 


Annotation confidence Low
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Genome context
chr7: 18275180-18275404 [+]

Database links

Mature mtr-miR2655b-5p

Accession MIMAT0013441
Description Medicago truncatula mtr-miR2655b-5p mature miRNA
Sequence 2 - CGUUUUGGUCCCUUAACUUUA - 22
Evidence experimental
454 [1]

Mature mtr-miR2655b-3p

Accession MIMAT0054953
Description Medicago truncatula mtr-miR2655b-3p mature miRNA
Sequence 205 - AUAAAGUUAAGGGACCUAAAC - 225
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796