miRBase entry: mtr-MIR2655d

Stem-loop mtr-MIR2655d


Accession
MI0011990
Description
Medicago truncatula mtr-MIR2655d precursor miRNA


Sequence

28702 reads, 263.0 reads per million, 111 experiments
cccauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucaguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguugagggaccaaauuaauacuaauuaaauaaguuaagggaccaaacuaauacuaauuaaauaaguuaagagaccaaaauuuaacauuuuuuuaaauuaaauuaacagaaaggaccaaaccgauacuuuaAAUAAAGUUAAGGGACCUAAACggacuuuuuauuacuuauggga
((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((.(((((((.((((((((..((.......(((..(((.(((.(((.(((...((.......))...))).))).))).))))))....))..)))))))).))))))).)))))))))))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))).

Structure
-                                                    a                          c       c        ga  gaccaaa   au   a   a   a   uaa  ga 
 cccauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguauc guuugguccuuucuguuaauuuaauu aaaaaaa guuaaguu  gg       uua  acu auu aau agu   gg  c
 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||  ||       |||  ||| ||| ||| |||   ||  c
 ggguauucauuauuuuucaggCAAAUCCAGGGAAUUGAAAUAAauuucauag caaaccaggaaagacaauuaaauuaa uuuuuuu caauuuaa  cc       aau  uga uaa uua uca   uc  a
a                                                    c                          a       a        aa  ---agag   --   a   a   a   uaa  aa 


Annotation confidence Low
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Genome context
chr1: 23673623-23673889 [+]

Database links

Mature mtr-miR2655d-5p

Accession MIMAT0013443
Description Medicago truncatula mtr-miR2655d-5p mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

Mature mtr-miR2655d-3p

Accession MIMAT0054955
Description Medicago truncatula mtr-miR2655d-3p mature miRNA
Sequence 224 - AAUAAAGUUAAGGGACCUAAAC - 245
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796