Stem-loop mtr-MIR2655e

Accession

MI0011991

Description

Medicago truncatula mtr-MIR2655e precursor miRNA

Sequence

6806 reads, 76.0 reads per million, 111 experiments

uccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugauccuuucuguuaauuuaauucaaaaaaaauguuaaguuuagggaccaaacuaauacuaauuaaauaagauaagggaucaaaauuuaacauguuuuuugaauuaaauuuuuuuaauaaaguuuaggggccaaaacaGACCUUUUAUUACUUAUGgga
((((((((((((((((((((.((((.(((((((.(((((((((.((((.(((.....))).)))).....((((((((((((((((.(((((((((((.((..((..........................))..)).))))))))))).)))))))))))))))).....))))))))).))))))).)))).)))))))))))))))))))).

Structure

-                    C    A       U         uaaaguaucgguuugauccuuucuguu                a           a  ga  aaacuaauacua 
 uccauaaguaauaaaagguc GUUU GGUCCCU AACUUUAuu                           aauuuaauucaaaaaa auguuaaguuu gg  cc            a
 |||||||||||||||||||| |||| ||||||| |||||||||                           |||||||||||||||| ||||||||||| ||  ||             
 ggGUAUUCAUUAUUUUCCAG caaa ccgggga uugaaauaa                           uuaaauuaaguuuuuu uacaauuuaaa cu  gg            u
a                    a    a       u         ----------------------uuuuu                g           a  ag  aauagaauaaau 

Annotation confidence Low

Genome context

chr2: 13982332-13982546 [+]

Mature mtr-miR2655e-5p

• Accession: MIMAT0013444
• Description: Medicago truncatula mtr-miR2655e-5p mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2655e-3p

• Accession: MIMAT0054956
• Description: Medicago truncatula mtr-miR2655e-3p mature miRNA
• Sequence: 195 - GACCUUUUAUUACUUAUG - 212
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796