miRBase entry: mtr-MIR2655g

Stem-loop mtr-MIR2655g


Accession
MI0011993
Description
Medicago truncatula mtr-MIR2655g precursor miRNA


Sequence

24907 reads, 225.0 reads per million, 111 experiments
cucauaaguaauaaaaagucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuuaguccuuuauguuaauuuaauucaaaaaaacguuaaguuuagggaccaaacuaauacuaauuaaauaaguuaagggaccaaacuaauacuaauuaaauaaguuaagagaccaaaauuuaacguauuuuuaauuaaauuaacagaagggaccaaacuguuacuuuaaauaaaguuaagggaucaAAACGGACCUUUUAUUACUUAaggga
(((.((((((((((((.((((((((.((((((((((((((((((((((((.((((((.(((((((.(((((((((((((.(((((.(((((((((((.((.....((((.....((((((....((((.........)))).....))))))....))))......)).))))))))))).)))))))))))))))))).))))))).)))))).)))))))))))))))))))))))).)))))))).)))))))))))).))).

Structure
-   a            a        A                        u      a       a             c     a           a  -gacca    aauac      -aaua    aag 
 cuc uaaguaauaaaa gucCGUUU GGUCCCUUAACUUUAuuuaaagua cgguuu guccuuu uguuaauuuaauu aaaaa acguuaaguuu gg      aacu     uaauua     aguu   g
 ||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| ||||||||||| ||      ||||     ||||||     ||||   g
 ggg AUUCAUUAUUUU CAGGCAAA cuagggaauugaaauaaauuucau gucaaa cagggaa acaauuaaauuaa uuuuu ugcaauuuaaa cc      uuga     auuaau     ucaa   a
a   a            C        a                        u      c       g             -     a           a  agagaa    -auaa      cauaa    acc 


Annotation confidence Low
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Genome context
chr3: 35510189-35510454 [-]

Database links

Mature mtr-miR2655g-5p

Accession MIMAT0013446
Description Medicago truncatula mtr-miR2655g-5p mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

Mature mtr-miR2655g-3p

Accession MIMAT0054958
Description Medicago truncatula mtr-miR2655g-3p mature miRNA
Sequence 241 - AAACGGACCUUUUAUUACUUA - 261
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796