Stem-loop mtr-MIR2655i

Accession

MI0011995

Description

Medicago truncatula mtr-MIR2655i precursor miRNA

Sequence

cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguauuaguuuggucauuucuguuaauuuaauucaaaaaaacguuaaguuuagggaccaaacuaauacuaauuaaauaagcuaagggaccaaauuaauacuaauuaaauaaguuaagcgaccaaaauuuaacguuuuuuuuguuaauuuuugcauuaaauuaacagaagggaccaaaccgauacuugaaauaaaguuaaagaccuaaagggaccuuuuauuucuuauggga
((((((((.((((((((((((.((((((((..((((((((((((.(((((((.((((((((.((((((((((((((((.((((((((((((((((((.((.....((((.....((((((..........................))))))....))))......)).))))))))))))...........)))))).)))))))))))))))).)))))))).))))))).)))))))))))).)))))))).)))))))))))).)))))))).

Structure

-        u            G        CC            a       a        a                u      -----------            a  -gacca    aauac      aauaagcuaagg 
 cccauaag aauaaaaggucC UUUAGGUC  UUAACUUUAuuu aaguauu guuugguc uuucuguuaauuuaau caaaaa           aacguuaaguuu gg      aacu     uaauua            g
 |||||||| |||||||||||| ||||||||  |||||||||||| ||||||| |||||||| |||||||||||||||| ||||||           |||||||||||| ||      ||||     ||||||             
 ggguauuc uuauuuuccagg aaauccag  aauugaaauaaa uucauag caaaccag gaagacaauuaaauua guuuuu           uugcaauuuaaa cc      uuga     auuaau            a
a        u            g        -a            g       c        g                c      aauuguuuuuu            a  agcgaa    -auaa      cauaauuaaacc 

Annotation confidence Not enough data

Genome context

chr3: 11020308-11020584 [-]

Mature mtr-miR2655i

• Accession: MIMAT0013448
• Description: Medicago truncatula mtr-miR2655i mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796