Stem-loop mtr-MIR2655j

Accession

MI0011996

Description

Medicago truncatula mtr-MIR2655j precursor miRNA

Sequence

ccucuaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugauccuuucuauuaauuuaauucaaaaaaauguuaaguuuagcgaccaaauuaauacuaauugaauaaguuaagggaccaaacuaauacuaauuaaauaagauaagggaccaaaauuuaacauuuuuuugaauuaaauuaacagaaaggaccaaacugauacuuucaauaaaguuaaaggaccaauacggaccuuuuauuacuuauggga
(((.(((((((((((((((((((...(((((.(((((((((((.((((((((((((((.((((((((.((((((((((((((((((((((((((((((((.....(((((....)))))......)))).((..((..........................))..))..)))))))))))))))))))))))))))).)))))))).)))))))))))))).))))))))))).)))))...))))))))))))))))))).))).

Structure

-   c                   UUA     C           u              a        a                            -----------------------------------------    -gacca     a 
 ccu uaaguaauaaaaggucCGU   GGUCC UUAACUUUAuu aaaguaucgguuug uccuuucu uuaauuuaauucaaaaaaauguuaaguu                                         uagc      aauua u
 ||| |||||||||||||||||||   ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||                                         ||||      |||||  
 ggg auucauuauuuuccaggca   ccagg aauugaaauaa uuucauagucaaac aggaaaga aauuaaauuaaguuuuuuuacaauuuaa                                         auug      uuaau a
a   u                   uaa     a           c              c        c                            aaccagggaauagaauaaauuaaucauaaucaaaccaggga    aauaag     c 

Annotation confidence Not enough data

Genome context

chr4: 12695849-12696115 [+]

Mature mtr-miR2655j

• Accession: MIMAT0013449
• Description: Medicago truncatula mtr-miR2655j mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796