Stem-loop mtr-MIR2655k

Accession

MI0011997

Description

Medicago truncatula mtr-MIR2655k precursor miRNA

Sequence

cucauaaguaauaaaagguuCGUUUAGGUCCCUUAACUUUAuuuuaaguaucgguuuaaucauuuauguuaauuuaauucaaaaaagcguuaaguuuagggacgaaacuaauacuaauuaaauaaguuaagggaccaaucuaacacuaauuaaauaaguuaagggaccaaaacuugccguuuuuugaauuaaauuaauagaaaagaucaaaccgauacuuuaaauaaaauuaaaggaccuaaacgaacuuuuuauuacuuauggga
(((((((((((((((((((((((((((((((.((((.(((((((.((((((((((((.(((.(((.((((((((((((((((((((.((.(((((((.((..(..((((.....((((((.....((((.((......))))))..))))))....))))...)..)).))))))).)))))))))))))))))))))).))).))).)))))))))))).))))))).)))).))))))))))))))))))))))))))))))).

Structure

-                               C    C       u            a   a   a                    g  u       a  ga -ga    aauac      aauaa    a  ga 
 cucauaaguaauaaaagguuCGUUUAGGUCC UUAA UUUAuuu aaguaucgguuu auc uuu uguuaauuuaauucaaaaaa cg uaaguuu gg  c   aacu     uaauua     guua gg  c
 ||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||| ||| |||||||||||||||||||| || ||||||| ||  |   ||||     ||||||     |||| ||   
 ggguauucauuauuuuucaagcaaauccagg aauu aaauaaa uucauagccaaa uag aaa auaauuaaauuaaguuuuuu gc guucaaa cc  g   uuga     auuaau     caau cu  c
a                               a    a       u            c   a   g                    -  c       a  ag gaa    -auaa      ---ca    -  aa 

Annotation confidence Not enough data

Genome context

chr4: 20298253-20298518 [-]

Mature mtr-miR2655k

• Accession: MIMAT0013450
• Description: Medicago truncatula mtr-miR2655k mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796