miRBase entry: mtr-MIR2661

Stem-loop mtr-MIR2661


Accession
MI0012015
Description
Medicago truncatula mtr-MIR2661 precursor miRNA


Sequence

3703 reads, 24.0 reads per million, 108 experiments
guagcuucuugauuuugcaaUAGGUUUGAGAAAAUGGGCAGuucauucauuagaaugagagagacuauuugucaaaaaucucaagucuuuuagaauuGUCCAUUUUCUCAGAUCUAUUacaaacaccguugaagaacc
....((((.....((((.((((((((((((((((((((((((((.......(((.(((((..(((.....))).....)))))..)))....)))))))))))))))))))))))))).)))).......))))....

Structure
guag    --uugau    c                          auucauu   -a     ---ga   u 
    cuuc       uuug aaUAGGUUUGAGAAAAUGGGCAGuuc       aga  ugaga     gac a
    ||||       |||| ||||||||||||||||||||||||||       |||  |||||     ||| u
    gaag       aaac UUAUCUAGACUCUUUUACCUGuuaag       ucu  acucu     cug u
ccaa    uugccac    a                          ---auuu   ga     aaaaa   u 


Annotation confidence High
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Genome context
chr3: 18890004-18890141 [+]

Database links

Mature mtr-miR2661-5p

Accession MIMAT0013468
Description Medicago truncatula mtr-miR2661-5p mature miRNA
Sequence 21 - UAGGUUUGAGAAAAUGGGCAG - 41
Evidence experimental
454 [1]

Mature mtr-miR2661-3p

Accession MIMAT0054977
Description Medicago truncatula mtr-miR2661-3p mature miRNA
Sequence 98 - GUCCAUUUUCUCAGAUCUAUU - 118
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796