miRBase entry: mtr-MIR2668

Stem-loop mtr-MIR2668


Accession
MI0012022
Description
Medicago truncatula mtr-MIR2668 precursor miRNA


Sequence

14982 reads, 166.0 reads per million, 111 experiments
aaugguuaaauauguauUUCAUCCUUGCAAUUAGGGGUCguuuaaaaauugguccuuauauuuguuaauccugacaauuuaccccuaauugcaAGAAUGAAAUACAUAUUUAAGucuaua
.(((((((((((((((((((((.(((((((((((((((.......((((((.......................))))))))))))))))))))).)))))))))))))))))..)))).

Structure
a    --                 C               Cguuuaa      guccuuauau 
 augg  uuaaauauguauUUCAU CUUGCAAUUAGGGGU       aaauug          u
 ||||  ||||||||||||||||| |||||||||||||||       ||||||          u
 uauc  AAUUUAUACAUAAAGUA GAacguuaaucccca       uuuaac          g
a    uG                 A               -------      aguccuaauu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr3: 25640792-25640911 [+]

Database links

Mature mtr-miR2668-5p

Accession MIMAT0013475
Description Medicago truncatula mtr-miR2668-5p mature miRNA
Sequence 18 - UUCAUCCUUGCAAUUAGGGGUC - 39
Evidence experimental
454 [1]

Mature mtr-miR2668-3p

Accession MIMAT0054984
Description Medicago truncatula mtr-miR2668-3p mature miRNA
Sequence 94 - AGAAUGAAAUACAUAUUUAAG - 114
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796