Stem-loop mtr-MIR399q

Accession

MI0012024

Description

Medicago truncatula mtr-MIR399q precursor miRNA

Literature search

8 open access papers mention mtr-MIR399q
(22 sentences)

Sequence

2036 reads, 18.0 reads per million, 110 experiments

guaagcaaaucauucaaaGGGCAUAUCUCCUUUGGCAGGuauaaugggugguugcuaguuuauuuuacaucuauauuaaaauuuuauguguuuauuuaucaaauaaaaaauaaaaaaaacuaucaugguaaacaacuUGCCAAAGGAGAGCUGCUCUUugaguguuuagcuuag
.(((((.((.(((((((((((((..(((((((((((((((...(((((((.................))))))).......((((((...(((((((...)))))))..))))))...((((...)))).....)))))))))))))))..))))))))))))).)).))))).

Structure

g     a  u             UA               auaaugggugguugcuaguuuauuuuacaucuauauuaaaa      gug       a 
 uaagc aa cauucaaaGGGCA  UCUCCUUUGGCAGGu                                         uuuuau   uuuauuu  
 ||||| || |||||||||||||  |||||||||||||||                                         ||||||   ||||||| u
 auucg uu gugaguUUCUCGU  AGAGGAAACCGUuca                                         aaaaua   aaauaaa  
g     a  u             CG               ----------------------acaaaugguacuaucaaaa      -aa       c 

Annotation confidence High

Genome context

chr1: 30126820-30126993 [+]

Mature mtr-miR399q-5p

• Accession: MIMAT0054986
• Description: Medicago truncatula mtr-miR399q-5p mature miRNA
• Sequence: 19 - GGGCAUAUCUCCUUUGGCAGG - 39
• Evidence: experimental ; unknown

Mature mtr-miR399q-3p

• Accession: MIMAT0013477
• Description: Medicago truncatula mtr-miR399q-3p mature miRNA
• Sequence: 138 - UGCCAAAGGAGAGCUGCUCUU - 158
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796