Stem-loop mtr-MIR2673b

Accession

MI0012041

Description

Medicago truncatula mtr-MIR2673b precursor miRNA

Sequence

gguguugcucuuccgcuuCCUCUUCCUCUUCCUCUUCCACauccucgucaagaauuucagcaucaucguuaguuucgauagcgacuucauuuugcauuugugaagcugaauugguccagauuucauuaacgaagucaucgucauuaaacccugcugccagauuuucuaugggauuuguuugugaauuuggccauugaggugcauagcuuguuuggggauaguugacaaaguguggagggguugguagguugaacgaggaguauugugauuggucug
.....((((((((.(.(((..(((((....((.(((((((((.(((((..((((((((((((......(((((..((((...((((((...........(((((((((........))).))))))....))))))))))..)))))....)))))..)))))))..))))).....(((((.((((...(((...((((.....))))...)))....)))).))))))))))))))))..)).)))..))))))))))))..............

Structure

---------ggugu        c c   CU   -  UCUU  U         --------------------------------------------------------c     ca       --     ucaucg     uu    agc      auuuugcauuu      -   aau 
              ugcucuuc g uuC  CUU CC    CC CUUCCACau                                                         cucgu  agaauuu  cagca      uuagu  cgau   gacuuc           gugaag cug   u
              |||||||| | |||  ||| ||    || |||||||||                                                         |||||  |||||||  |||||      |||||  ||||   ||||||           |||||| |||    
              augaggag c aag  gga gg    gg ggaggugug                                                         gggua  uuuuaga  gucgu      aauua  gcua   cugaag           uacuuu gac   g
gucugguuaguguu        - -   uu   u  --uu  -         aaacaguugauagggguuuguucgauacguggaguuaccgguuuaaguguuuguuua     uc       cc     --ccca     cu    ---      -------caau      a   cug 

Annotation confidence Not enough data

Genome context

chr5: 20465409-20465684 [-]

Mature mtr-miR2673b

• Accession: MIMAT0013494
• Description: Medicago truncatula mtr-miR2673b mature miRNA
• Sequence: 19 - CCUCUUCCUCUUCCUCUUCCAC - 40
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796