miRBase entry: mtr-MIR2676b

Stem-loop mtr-MIR2676b


Accession
MI0012046
Description
Medicago truncatula mtr-MIR2676b precursor miRNA


Sequence

20483 reads, 201.0 reads per million, 111 experiments
ccauuguuuggauaauaauuugaagaauuuucaaaaugaUGGAAAUUUAUGAAGUAUUUUGUUcaaguuaaaauuagagaauuucaaaugacaccuaaaaguguguuuggaugaaugaauguuuugagggaauucaaauacuuuaagaugaauucCAUUGUUUGGAUAAUAAUUUGaagaauuuucaaaaugaug
.((((((((.((.(((..((((((..(((.((.(((((((((((.((((((((((((((.((((...(((((((........(((((((.((((......))))))))))).........)))))))..))))..)))))))))...)))))))))))))))).)).)))..))))))..))).)).))))))))

Structure
c        g  u   aa      ga   u  a           A     ---         -U    aag       -uagagaau       g    cu 
 cauuguuu ga aau  uuugaa  auu uc aaaugaUGGAA UUUAU   GAAGUAUUU  GUUc   uuaaaau         uucaaau acac  a
 |||||||| || |||  ||||||  ||| || ||||||||||| |||||   |||||||||  ||||   |||||||         ||||||| ||||   
 guaguaaa cu uua  aaGUUU  UAA AG UUUGUUACcuu aagua   uuucauaaa  uaag   aguuuug         agguuug ugug  a
-        a  u   ag      AA   U  G           -     gaa         cu    -gg       uaaguaagu       -    aa 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR2676b-5p

Accession MIMAT0055007
Description Medicago truncatula mtr-miR2676b-5p mature miRNA
Sequence 40 - UGGAAAUUUAUGAAGUAUUUUGUU - 63
Evidence experimental
unknown

Mature mtr-miR2676b-3p

Accession MIMAT0013499
Description Medicago truncatula mtr-miR2676b-3p mature miRNA
Sequence 156 - CAUUGUUUGGAUAAUAAUUUG - 176
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796