Stem-loop mtr-MIR2678

Accession

MI0012053

Description

Medicago truncatula mtr-MIR2678 precursor miRNA

Literature search

1 open access papers mention mtr-MIR2678
(1 sentences)

Sequence

39609 reads, 255.0 reads per million, 111 experiments

aucacguagaucccaaccaaagauacucgccacuuguuuuagagcuucucuccaucuugacaccaucugagagucuugucggaaucuuuguucauguuuggcaaaagcuucagaauaaaucccacuuugcuuucgaaccUCAGAAGGAUCAACAUCAUAGaaaacaagaagaacauguuuuucagauuccucaaugcauucacaaaucuucucuaauucuugcaagcaccaugucgaggaagcauaauuucuugagaagacggcaacaaaaacaugagauccuuggauugcucgaagaagcucaggcccuauggauucaccuuuuugaagauuuguaucaucccgaaauacaaaaauaccuuuuguuucaaaggcaucaaaaagaaaaucaaugaaauuguugcgagUGUCUUCACCUCUGAAAGugac
.((((.((((.........(((((((((((.((..((((((((((((((.((....((((..((.(((((((((...((.(((...(((((((.((...(((....))).)))))))))))).))...))).......)))))).)).)))).(((...(((((((.(.....).)))))))..)))........(((.((.(((....((((......(((...((....(.((((((((......)))))))).).....))..)))......))))...))))).)))..))))))))))..........((((...((((((((...(((((((.........)))))))....(((((......)))))..))))))))..))))..)))))).)).)))))))))))....))))...)))).

Structure

a    --g    ucccaacca           c  uu      -----------------------------------------------------------------------------------------        c  -----------------------------------------------------------------------------------------------------------------------------------------cauc    ca  a      -------   cuu  c   auc       a  uuu   a 
 ucac   uaga         aagauacucgc ac  guuuua                                                                                         gagcuucu uc                                                                                                                                             uuga  cc ucugag       agu   gu gga   uuuguuc ug   ggc a
 ||||   ||||         ||||||||||| ||  ||||||                                                                                         |||||||| ||                                                                                                                                             ||||  || ||||||       |||   || |||   ||||||| ||   |||  
 aguG   GUCU         UUCUGUgagcg ug  uaaagu                                                                                         cucgaaga ag                                                                                                                                             AACU  GG AGACUc       ucg   ca ccu   aaauaag ac   ucg a
c    AAA    -----CCAC           u  -u      aacuaaaagaaaaacuacggaaacuuuguuuuccauaaaaacauaaagcccuacuauguuuagaaguuuuuccacuuagguaucccgga        -  cucguuagguuccuagaguacaaaaacaacggcagaagaguucuuuaauacgaaggagcuguaccacgaacguucuuaaucucuucuaaacacuuacguaacuccuuagacuuuuuguacaagaagaacaaaaGAUACUAC    -A  A      caagcuu   uuu  c   ---       -  --u   a 

Annotation confidence Not enough data

Genome context

chr6: 19671276-19671704 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2678

Mature mtr-miR2678-5p

• Accession: MIMAT0055013
• Description: Medicago truncatula mtr-miR2678-5p mature miRNA
• Sequence: 140 - UCAGAAGGAUCAACAUCAUAG - 160
• Evidence: experimental ; unknown

Mature mtr-miR2678-3p

• Accession: MIMAT0013506
• Description: Medicago truncatula mtr-miR2678-3p mature miRNA
• Sequence: 408 - UGUCUUCACCUCUGAAAG - 425
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796