Stem-loop mtr-MIR2679a

Accession

MI0012054

Description

Medicago truncatula mtr-MIR2679a precursor miRNA

Sequence

68977 reads, 206.0 reads per million, 111 experiments

auggcgguccgaaacucauaCUUUUCACUUUCGAACGGGUGaguguacuaucacuuuggaagacgucuauaugUUACUCGGCUUACCUUUUGGAGguucaauuguuacggcuccuccaa
.(((.((.(((.(((...........(((((((((.((((((((.......((...((((.....))))..)).......)))))))))))))))))......))).)))..)).))).

Structure

a   c  -u   a   ucauaCUUUUC         C        guacuau  cuu    a 
 ugg gg  ccg aac           ACUUUCGAA GGGUGagu       ca   ugga g
 ||| ||  ||| |||           ||||||||| ||||||||       ||   |||| a
 acc cc  ggc uug           ugGAGGUUU UCCAUUCG       gu   aucu c
a   u  uc   a   -----uuaacu         -        GCUCAUU  -au    g 

Annotation confidence Low

Genome context

chr2: 26916150-26916268 [+]

Mature mtr-miR2679a-5p

• Accession: MIMAT0013507
• Description: Medicago truncatula mtr-miR2679a-5p mature miRNA
• Sequence: 21 - CUUUUCACUUUCGAACGGGUG - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2679a-3p

• Accession: MIMAT0055014
• Description: Medicago truncatula mtr-miR2679a-3p mature miRNA
• Sequence: 74 - UUACUCGGCUUACCUUUUGGAG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796