Stem-loop mtr-MIR2679c

Accession

MI0012056

Description

Medicago truncatula mtr-MIR2679c precursor miRNA

Sequence

80835 reads, 242.0 reads per million, 111 experiments

auggcgguccgaaacccauaCUUUUCACUUUCGAACGGGUGaguguacuaucacuuuggaagacgucuauaugUUACUCGGCUUACCUUUUGGAGguugaauuguuacggcuccuccaa
.(((.((.(((........((..((((((((((((.((((((((.......((...((((.....))))..)).......)))))))))))))))).))))..))..)))..)).))).

Structure

a   c  -u   aaacccau  UU    -        C        guacuau  cuu    a 
 ugg gg  ccg        aC  UUCA CUUUCGAA GGGUGagu       ca   ugga g
 ||| ||  |||        ||  |||| |||||||| ||||||||       ||   |||| a
 acc cc  ggc        ug  aagu gGAGGUUU UCCAUUCG       gu   aucu c
a   u  uc   ------au  uu    u        -        GCUCAUU  -au    g 

Annotation confidence Low

Genome context

AC145023.4: 61375-61493 [-]

Mature mtr-miR2679c-5p

• Accession: MIMAT0013509
• Description: Medicago truncatula mtr-miR2679c-5p mature miRNA
• Sequence: 21 - CUUUUCACUUUCGAACGGGUG - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2679c-3p

• Accession: MIMAT0055016
• Description: Medicago truncatula mtr-miR2679c-3p mature miRNA
• Sequence: 74 - UUACUCGGCUUACCUUUUGGAG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796