Stem-loop mtr-MIR2680b

Accession

MI0012058

Description

Medicago truncatula mtr-MIR2680b precursor miRNA

Sequence

auagggucuagaccuggcauaucuucauaggaccaugcaaaaauaucuggauauucccggaggaguuggaugaucuucuguuuaaccccuuccucuagaguggcaccaaucuugauuucucgcuuguuuUCCUCGGUACCUAUGUUGAUaagcucgaucucuucuugg
.(((((...(((.(.(((.((((..(((((((((.....((((((...((......))(((((.(((((((........))))))).))))).((.(((.((....)).))).)).........))))))....))).))))))..)))).))).).)))..))))).

Structure

a     ucu   c u   a    uu      -   augca      -------------------ucuggauauuccc     a       gau 
 uaggg   aga c ggc uauc  cauagg acc     aaaaua                                ggagg guuggau   c
 |||||   ||| | ||| ||||  |||||| |||     ||||||                                ||||| |||||||    
 guucu   ucu g ucg aUAG  GUAUCC UGG     Uuuugu                                cuucc caauuug   u
g     -uc   a c   a    UU      A   -CUCC      ucgcucuuuaguucuaaccacggugagaucuc     c       ucu 

Annotation confidence Not enough data

Genome context

chr5: 28991511-28991678 [+]

Mature mtr-miR2680b

• Accession: MIMAT0013511
• Description: Medicago truncatula mtr-miR2680b mature miRNA
• Sequence: 130 - UCCUCGGUACCUAUGUUGAU - 149
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796