Stem-loop mtr-MIR2680d

Accession

MI0012060

Description

Medicago truncatula mtr-MIR2680d precursor miRNA

Sequence

auagggucuagaccuggcauaucuucauaggaccaugcaaaaauauccggauauucccggaggaguuggaugaucuucuguuuaaccccuuccucuagaguagcaccaaucuugauuucucgcuuguuuUCCUCGGUACCUAUGUUGAUaagcucaaucucuucuugg
.(((((...(((...(((.((((..(((((((((.....((((((..(((((((((..(((((((..((.(((........))).))..))))))).)))))...............)).))..))))))....))).))))))..)))).)))...)))..))))).

Structure

a     ucu   ccu   a    uu      -   augca      uc  -  ---------------     cc       uu  a   ucu 
 uaggg   aga   ggc uauc  cauagg acc     aaaaua  cg ga               uauuc  ggaggag  gg uga   u
 |||||   |||   ||| ||||  |||||| |||     ||||||  || ||               |||||  |||||||  || |||    
 guucu   ucu   ucg aUAG  GUAUCC UGG     Uuuugu  gc cu               augag  ucuccuu  cc auu   c
g     -uc   aac   a    UU      A   -CUCC      uc  u  uuaguucuaaccacg     -a       cc  a   ugu 

Annotation confidence Not enough data

Genome context

chr3: 6163059-6163226 [+]

Mature mtr-miR2680d

• Accession: MIMAT0013513
• Description: Medicago truncatula mtr-miR2680d mature miRNA
• Sequence: 130 - UCCUCGGUACCUAUGUUGAU - 149
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796