Stem-loop rno-mir-675

Accession

MI0012603

Description

Rattus norvegicus rno-mir-675 precursor miRNA

Literature search

12 open access papers mention rno-mir-675
(63 sentences)

Sequence

1490 reads, 11 reads per million, 99 experiments

ugcggcccagggacUGGUGCGGAAAGGGCCCACAGUggacuuggugcacUGUAUGCCCUAACCGCUCAGUcccugggucuggca
(((((((((((((((((.((((..(((((..((((((.((...)).))))))..)))))..))))))))))))))))))..)))

Structure

   --              U    AA     CC      g  u 
ugc  ggcccagggacUGG GCGG  AGGGC  ACAGUg ac  
|||  |||||||||||||| ||||  |||||  |||||| || u
acg  cugggucccUGACU CGCC  UCCCG  UGUcac ug  
   gu              -    AA     UA      g  g 

Annotation confidence High

Genome context

chr1: 215745981-215746064 [-]

Mature rno-miR-675-5p

• Accession: MIMAT0012841
• Description: Rattus norvegicus rno-miR-675-5p mature miRNA
• Sequence: 15 - UGGUGCGGAAAGGGCCCACAGU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-675-3p

• Accession: MIMAT0017363
• Description: Rattus norvegicus rno-miR-675-3p mature miRNA
• Sequence: 50 - UGUAUGCCCUAACCGCUCAGU - 70
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39