Stem-loop rno-mir-667

Accession

MI0012614

Description

Rattus norvegicus rno-mir-667 precursor miRNA

Literature search

4 open access papers mention rno-mir-667
(9 sentences)

Sequence

28415 reads, 35 reads per million, 278 experiments

guggguacuggccuCGGUGCUGGUGGAGCAGUGAGCACgccauacauuauaucugUGACACCUGCCACCCAGCCCAAggccccuaggcccac
((((((...(((((.((.(((((.(..((((....((((..............))))....))))..)))))))).))))).....))))))

Structure

      --acu     C  U     U GA    UGAG    ccauac 
gugggu     ggccu GG GCUGG G  GCAG    CACg      a
||||||     ||||| || ||||| |  ||||    ||||       
cacccg     ccggA CC CGACC C  CGUC    GUgu      u
      gaucc     A  -     - AC    CACA    cuauau 

Annotation confidence High

Genome context

chr6: 133869570-133869661 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from rno-mir-667

Mature rno-miR-667-5p

• Accession: MIMAT0017369
• Description: Rattus norvegicus rno-miR-667-5p mature miRNA
• Sequence: 15 - CGGUGCUGGUGGAGCAGUGAGCAC - 38
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-667-3p

• Accession: MIMAT0012852
• Description: Rattus norvegicus rno-miR-667-3p mature miRNA
• Sequence: 56 - UGACACCUGCCACCCAGCCCAA - 77
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39