Stem-loop eca-mir-1842

Accession

MI0012799

Description

Equus caballus eca-mir-1842 precursor miRNA

Sequence

11066 reads, 32.0 reads per million, 153 experiments

UGGCUCUGUGAGGUCGGCUCAAggugggucuggauauugAGCAGGCCUGUCAGGGCGUUG
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure

--UG      UG     G      g  ggg 
    GCUCUG  AGGUC GCUCAA gu   u
    ||||||  ||||| |||||| ||    
    CGGGAC  UCCGG CGAguu ua   c
GUUG      UG     A      a  ggu 

Annotation confidence High

Genome context

13: 41809742-41809801 [+]

Mature eca-miR-1842-5p

• Accession: MIMAT0013055
• Description: Equus caballus eca-miR-1842-5p mature miRNA
• Sequence: 1 - UGGCUCUGUGAGGUCGGCUCAA - 22
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1842-3p

• Accession: MIMAT0051397
• Description: Equus caballus eca-miR-1842-3p mature miRNA
• Sequence: 40 - AGCAGGCCUGUCAGGGCGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131


2. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545