Stem-loop ssc-let-7a-1

Accession

MI0013085

Description

Sus scrofa ssc-let-7a-1 precursor miRNA

Literature search

50 open access papers mention ssc-let-7a-1
(164 sentences)

Sequence

3118 reads, 1026 reads per million, 15 experiments

cccagguUGAGGUAGUAGGUUGUAUAGUUuagaauuguaucaagggagauaacuguacagccuccuagcuuuccuugggu
((((((..(((.(((.((((((((((((.........((((......)))))))))))))))).))).)))..)))))).

Structure

-      uU   G   U            Uuagaauug    aa 
 cccagg  GAG UAG AGGUUGUAUAGU         uauc  g
 ||||||  ||| ||| ||||||||||||         ||||   
 ggguuc  uuc auc uccgacauguca         auag  g
u      cu   g   c            ---------    ag 

Annotation confidence Not enough data

Genome context

chr9: 54378059-54378138 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-let-7a-1

Mature ssc-let-7a

• Accession: MIMAT0013865
• Description: Sus scrofa ssc-let-7a mature miRNA
• Sequence: 8 - UGAGGUAGUAGGUUGUAUAGUU - 29
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100