Stem-loop ssc-mir-133b

Accession

MI0013089

Description

Sus scrofa ssc-mir-133b precursor miRNA

Literature search

49 open access papers mention ssc-mir-133b
(189 sentences)

Sequence

23327293 reads, 14838.0 reads per million, 183 experiments

ccugcucugGCUGGUCAAACGGAACCAAGUccgucuuccugagaggUUUGGUCCCCUUCAACCAGCUAUagcagggcugg
((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))).....

Structure

-----      c        CA  C  A      U  g    c 
     ccugcu ugGCUGGU  AA GG ACCAAG cc ucuu  
     |||||| ||||||||  || || |||||| || |||| c
     ggacga AUCGACCA  UU CC UGGUUU gg agag  
ggucg      U        AC  C  C      -  -    u 

Annotation confidence High

Genome context

chr7: 52430290-52430369 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-133b

Mature ssc-miR-133b-5p

• Accession: MIMAT0052611
• Description: Sus scrofa ssc-miR-133b-5p mature miRNA
• Sequence: 10 - GCUGGUCAAACGGAACCAAGU - 30
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-133b-3p

• Accession: MIMAT0013869
• Description: Sus scrofa ssc-miR-133b-3p mature miRNA
• Sequence: 47 - UUUGGUCCCCUUCAACCAGCUAU - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328