Stem-loop ssc-mir-320

Accession

MI0013097

Description

Sus scrofa ssc-mir-320 precursor miRNA

Literature search

17 open access papers mention ssc-mir-320
(30 sentences)

Sequence

12242541 reads, 6040.0 reads per million, 214 experiments

gcuccccuccGCCUUCUCUUCCCGGUUCUUCCcggagucgggAAAAGCUGGGUUGAGAGGGCGAAaaaggaagaggggac
..((((((((((((((((..(((((((.((((((....)))))).)))))))..))))))))).........))))))).

Structure

gc       ---------         UU       C      g 
  uccccuc         cGCCUUCUC  CCCGGUU UUCCcg a
  |||||||         |||||||||  ||||||| ||||||  
  aggggag         GCGGGAGAG  GGGUCGA AAgggc g
-c       aaggaaaAA         UU       A      u 

Annotation confidence Medium

Genome context

chr14: 6954934-6955013 [-]

Mature ssc-miR-320-5p

• Accession: MIMAT0052614
• Description: Sus scrofa ssc-miR-320-5p mature miRNA
• Sequence: 11 - GCCUUCUCUUCCCGGUUCUUCC - 32
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-320-3p

• Accession: MIMAT0013878
• Description: Sus scrofa ssc-miR-320-3p mature miRNA
• Sequence: 43 - AAAAGCUGGGUUGAGAGGGCGAA - 65
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100