Stem-loop ssc-mir-151

Accession

MI0013100

Description

Sus scrofa ssc-mir-151 precursor miRNA

Literature search

4 open access papers mention ssc-mir-151
(4 sentences)

Sequence

690 reads, 317 reads per million, 12 experiments

uuuuccugcccUCGAGGAGCUCACAGUCUAGUacgucucauccccuaCUAGACUGAAGCUCCUUGAGGAcagggaucguc
..((((((.((((((((((((..((((((((((.(........).)))))))))).)))))))))))).)))))).....

Structure

---uu      c            CA          c ucu 
     uuccug ccUCGAGGAGCU  CAGUCUAGUa g   c
     |||||| ||||||||||||  |||||||||| |    
     agggac GGAGUUCCUCGA  GUCAGAUCau c   a
cugcu      A            -A          c ccu 

Annotation confidence High

Genome context

chrUScaf1855: 7087-7166 [+]

Mature ssc-miR-151-5p

• Accession: MIMAT0013882
• Description: Sus scrofa ssc-miR-151-5p mature miRNA
• Sequence: 12 - UCGAGGAGCUCACAGUCUAGU - 32
• Evidence: experimental ; Illumina [1,3], cloned [2]

Mature ssc-miR-151-3p

• Accession: MIMAT0013883
• Description: Sus scrofa ssc-miR-151-3p mature miRNA
• Sequence: 48 - CUAGACUGAAGCUCCUUGAGGA - 69
• Evidence: experimental ; Illumina [1,3], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100