Stem-loop ssc-mir-10a

Accession

MI0013101

Description

Sus scrofa ssc-mir-10a precursor miRNA

Literature search

19 open access papers mention ssc-mir-10a
(60 sentences)

Sequence

67 reads, 22 reads per million, 11 experiments

ucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUauguaguuga
.((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))....

Structure

---u        A    G     C          uaaggaa 
    cuguauaU CCCU UAGAU CGAAUUUGUg       u
    |||||||| |||| ||||| ||||||||||        
    gauguaUA GGGG AUCUA GCUUAAACac       u
aguu        A    -     U          ugguguu 

Annotation confidence Not enough data

Genome context

chr12: 24791267-24791346 [-]

Mature ssc-miR-10a-5p

• Accession: MIMAT0013884
• Description: Sus scrofa ssc-miR-10a-5p mature miRNA
• Sequence: 9 - UACCCUGUAGAUCCGAAUUUGU - 30
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-10a-3p

• Accession: MIMAT0022954
• Description: Sus scrofa ssc-miR-10a-3p mature miRNA
• Sequence: 50 - CAAAUUCGUAUCUAGGGGAAU - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100