Stem-loop ssc-mir-340-1

Accession

MI0013110

Description

Sus scrofa ssc-mir-340-1 precursor miRNA

Literature search

2 open access papers mention ssc-mir-340-1
(4 sentences)

Sequence

860520 reads, 959.0 reads per million, 210 experiments

uaccuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCcaua
.......((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).))))

Structure

uaccugg    a        -CAA      U    g     ug 
       ugug UUAUAAAG    UGAGAC GAUU ucaua  u
       |||| ||||||||    |||||| |||| |||||  c
       auac GAUAUUUC    ACUCUG CUag ggugu  g
-------    C        AUUG      C    -     uu 

Annotation confidence High

Genome context

chr2: 80118849-80118928 [+]

Mature ssc-miR-340-5p

• Accession: MIMAT0013891
• Description: Sus scrofa ssc-miR-340-5p mature miRNA
• Sequence: 13 - UUAUAAAGCAAUGAGACUGAUU - 34
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-340-3p

• Accession: MIMAT0052619
• Description: Sus scrofa ssc-miR-340-3p mature miRNA
• Sequence: 55 - UCCGUCUCAGUUACUUUAUAGC - 76
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100