Stem-loop ssc-mir-193a

Accession

MI0013113

Description

Sus scrofa ssc-mir-193a precursor miRNA

Literature search

7 open access papers mention ssc-mir-193a
(15 sentences)

Sequence

15 reads, 7 reads per million, 8 experiments

gcgggagcugagggcUGGGUCUUUGCGGGCGAGAUGAggguguugguucAACUGGCCUACAAAGUCCCAGUccucggccc
...((.(((((((((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))))))))))))

Structure

gcg  a             U     C    G  A    ggu 
   gg gcugagggcUGGG CUUUG GGGC AG UGAg   g
   || ||||||||||||| ||||| |||| || ||||    
   cc cggcuccUGACCC GAAAC UCCG UC Acuu   u
---  -             U     A    G  A    ggu 

Annotation confidence Not enough data

Genome context

chr12: 45165038-45165117 [-]

Mature ssc-miR-193a-5p

• Accession: MIMAT0013894
• Description: Sus scrofa ssc-miR-193a-5p mature miRNA
• Sequence: 16 - UGGGUCUUUGCGGGCGAGAUGA - 37
• Evidence: experimental ; Illumina [1,3-4]

Mature ssc-miR-193a-3p

• Accession: MIMAT0013895
• Description: Sus scrofa ssc-miR-193a-3p mature miRNA
• Sequence: 50 - AACUGGCCUACAAAGUCCCAGU - 71
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100