Stem-loop ssc-mir-99a

Accession

MI0013114

Description

Sus scrofa ssc-mir-99a precursor miRNA

Literature search

12 open access papers mention ssc-mir-99a
(34 sentences)

Sequence

6042 reads, 1203 reads per million, 15 experiments

ccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcaCAAGCUCGCUUCUAUGGGUCUgugucagugug
.((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure

-c          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugU UGGGUAUCU  GCU GAACac gc   g
gu          C         UC   C      -  cag 

Annotation confidence Medium

Genome context

chr13: 191558610-191558689 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-99a

Mature ssc-miR-99a-5p

• Accession: MIMAT0013896
• Description: Sus scrofa ssc-miR-99a-5p mature miRNA
• Sequence: 12 - AACCCGUAGAUCCGAUCUUGUG - 33
• Evidence: experimental ; Illumina [1,3-4], cloned [2]

Mature ssc-miR-99a-3p

• Accession: MIMAT0037365
• Description: Sus scrofa ssc-miR-99a-3p mature miRNA
• Sequence: 49 - CAAGCUCGCUUCUAUGGGUCU - 69
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100


5. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252