Stem-loop ssc-mir-208b

Accession

MI0013129

Description

Sus scrofa ssc-mir-208b precursor miRNA

Literature search

18 open access papers mention ssc-mir-208b
(54 sentences)

Sequence

1654122 reads, 3535.0 reads per million, 83 experiments

cucucagggAAGCUUUUUGCUCGCGUUAUGUUucucauccgaauAUAAGACGAACAAAAGGUUUGUcugagggcagagug
((((((((.((((((((((.(((..((((((((.......))))))))..))).)))))))))).)))))))).......

Structure

-------        g          C   CG        cu 
       cucucagg AAGCUUUUUG UCG  UUAUGUUu  c
       |||||||| |||||||||| |||  ||||||||  a
       gggagucU UUUGGAAAAC AGC  AAUAuaag  u
gugagac        G          A   AG        cc 

Annotation confidence High

Genome context

chr7: 81071323-81071402 [-]

Mature ssc-miR-208b-5p

• Accession: MIMAT0052628
• Description: Sus scrofa ssc-miR-208b-5p mature miRNA
• Sequence: 10 - AAGCUUUUUGCUCGCGUUAUGUU - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-208b-3p

• Accession: MIMAT0013912
• Description: Sus scrofa ssc-miR-208b-3p mature miRNA
• Sequence: 45 - AUAAGACGAACAAAAGGUUUGU - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328