Stem-loop ssc-mir-142

Accession

MI0013134

Description

Sus scrofa ssc-mir-142 precursor miRNA

Literature search

15 open access papers mention ssc-mir-142
(41 sentences)

Sequence

864 reads, 378 reads per million, 13 experiments

gugcagucaccCAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGaugaguguacu
(((((.(((.(((((((((((.(((((((((...(..(....)..)..))))))))).))))))))))).))).))))).

Structure

-     g   c           A         Uaa ag a 
 gugca uca cCAUAAAGUAG AAGCACUAC   c  c c
 ||||| ||| ||||||||||| |||||||||   |  |  
 caugu agu GGUAUUUCAUC UUUGUGAUG   g  g u
u     g   a           C         -Ug ga g 

Annotation confidence High

Genome context

chr12: 36203916-36203995 [+]

Mature ssc-miR-142-5p

• Accession: MIMAT0013919
• Description: Sus scrofa ssc-miR-142-5p mature miRNA
• Sequence: 12 - CAUAAAGUAGAAAGCACUACU - 32
• Evidence: experimental ; Illumina [1,3]

Mature ssc-miR-142-3p

• Accession: MIMAT0020362
• Description: Sus scrofa ssc-miR-142-3p mature miRNA
• Sequence: 48 - UGUAGUGUUUCCUACUUUAUGG - 69
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100