Accession
MI0013138
Description
Sus scrofa
ssc-mir-542 precursor miRNA
Literature search
6 open access papers mention ssc-mir-542
(6 sentences)
(6 sentences)
Sequence
1211
reads,
388
reads per million, 11 experiments
ccucagacgucUCGGGGAUCAUCAUGUCACGAgagaccacugugcacuUGUGACAGAUUGAUAACUGAAAggucugggag
.(((((((.(.((((..((((...(((((((((.(((....)).).)))))))))...))))..)))).).)))))))..
.(((((((.(.((((..((((...(((((((((.(((....)).).)))))))))...))))..)))).).)))))))..
Structure
-c g c GG UCA a - c cucagac u UCGG AUCA UGUCACGAg g ac a ||||||| | |||| |||| ||||||||| | || gggucug A AGUC UAGU ACAGUGUuc c ug c ga g A AA UAG a g u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chrUScaf3177: 3348-3427 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-542
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-542-5p
| Accession | MIMAT0013924 |
| Description | Sus scrofa ssc-miR-542-5p mature miRNA |
| Sequence | 12 - UCGGGGAUCAUCAUGUCACGA - 32 |
| Evidence |
experimental
Illumina [1,3] |
Mature ssc-miR-542-3p
| Accession | MIMAT0013925 |
| Description | Sus scrofa ssc-miR-542-3p mature miRNA |
| Sequence | 49 - UGUGACAGAUUGAUAACUGAAA - 70 |
| Evidence |
experimental
Illumina [1,3], cloned [2] |
References
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