Stem-loop ssc-mir-195

Accession

MI0013141

Description

Sus scrofa ssc-mir-195 precursor miRNA

Literature search

37 open access papers mention ssc-mir-195
(141 sentences)

Sequence

293958 reads, 336.0 reads per million, 207 experiments

cagccccccuggcucUAGCAGCACAGAAAUAUUGGCaccgggcggagagucugCCAGUAUUGGCUGUGCUGCCCCAggca
.......(((((.....(((((((((.((((((((((...(((.....)))))))))))))..))))))))).)))))..

Structure

cagcccc     cucUA         -A          ccg   g 
       ccugg     GCAGCACAG  AAUAUUGGCa   ggc g
       |||||     |||||||||  ||||||||||   ||| a
       ggACC     CGUCGUGUC  UUAUGACCgu   cug g
-----ac     ----C         GG          ---   a 

Annotation confidence High

Genome context

chr12: 54717315-54717394 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-195

Mature ssc-miR-195-5p

• Accession: MIMAT0013928
• Description: Sus scrofa ssc-miR-195-5p mature miRNA
• Sequence: 16 - UAGCAGCACAGAAAUAUUGGC - 36
• Evidence: experimental ; Illumina [1,3], cloned [2]

Mature ssc-miR-195-3p

• Accession: MIMAT0052631
• Description: Sus scrofa ssc-miR-195-3p mature miRNA
• Sequence: 54 - CCAGUAUUGGCUGUGCUGCCCCA - 76
• Evidence: experimental ; Illumina [1,3], cloned [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328