Stem-loop ssc-mir-1277

Accession

MI0013146

Description

Sus scrofa ssc-mir-1277 precursor miRNA

Literature search

1 open access papers mention ssc-mir-1277
(1 sentences)

Sequence

19279 reads, 15.0 reads per million, 181 experiments

uagccucccaaaUAUAUAUAUAUAUGUACGUAUguguauaugaauguaUACGUAGAUAUAUAUGUAUUUUugguggguuu
.(((((.(((((.((((((((((((.(((((((((((......))))))))))).)))))))))))).))))).))))).

Structure

u     c     U            G           au 
 agccu ccaaa AUAUAUAUAUAU UACGUAUgugu  a
 ||||| ||||| |||||||||||| |||||||||||   
 uuggg gguUU UAUGUAUAUAUA AUGCAUaugua  u
u     u     U            G           ag 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-1277-5p

• Accession: MIMAT0052634
• Description: Sus scrofa ssc-miR-1277-5p mature miRNA
• Sequence: 13 - UAUAUAUAUAUAUGUACGUAU - 33
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-1277-3p

• Accession: MIMAT0013935
• Description: Sus scrofa ssc-miR-1277-3p mature miRNA
• Sequence: 49 - UACGUAGAUAUAUAUGUAUUUU - 70
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328