Stem-loop ssc-mir-1307

Accession

MI0013147

Description

Sus scrofa ssc-mir-1307 precursor miRNA

Literature search

6 open access papers mention ssc-mir-1307
(10 sentences)

Sequence

1005958 reads, 593.0 reads per million, 208 experiments

cuaccaaucUCGACCGGACCUCGACCGGCUcgucuauguugccaaucgACUCGGCGUGGCGUCGGUCGUGguagauaggc
((((((....(((((((.((.((.((((.(((..............))).)))))).))..)))))))))))))......

Structure

------      aucU       -A  U  A    C   ucuaug 
      cuacca    CGACCGG  CC CG CCGG Ucg      u
      ||||||    |||||||  || || |||| |||       
      gaugGU    GCUGGCU  GG GC GGCU Agc      u
cggaua      ----       GC  U  -    C   uaaccg 

Annotation confidence High

Genome context

chrUScaf3737: 46361-46440 [-]

Mature ssc-miR-1307-5p

• Accession: MIMAT0052635
• Description: Sus scrofa ssc-miR-1307-5p mature miRNA
• Sequence: 10 - UCGACCGGACCUCGACCGGCU - 30
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-1307-3p

• Accession: MIMAT0013936
• Description: Sus scrofa ssc-miR-1307-3p mature miRNA
• Sequence: 49 - ACUCGGCGUGGCGUCGGUCGUG - 70
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100