Stem-loop ssc-mir-1306

Accession

MI0013148

Description

Sus scrofa ssc-mir-1306 precursor miRNA

Literature search

3 open access papers mention ssc-mir-1306
(3 sentences)

Sequence

7 reads, 14 reads per million, 4 experiments

gucuccaCCACCUCCCCUGCAAACGUCCAgugaugcagagguaauggACGUUGGCUCUGGUGGUGAUGgacaggccgaac
(((((((.((((.((...((.((((((((...((......))..)))))))).))...)).)))).))))..))).....

Structure

-----   --    C    U  CCU  A        gug  gc 
     guc  ucca CACC CC   GC AACGUCCA   au  a
     |||  |||| |||| ||   || ||||||||   ||   
     cgg  agGU GUGG GG   CG UUGCAggu   ug  g
caagc   ac    A    U  UCU  G        -aa  ga 

Annotation confidence Not enough data

Genome context

chr14: 55110958-55111037 [+]

Mature ssc-miR-1306-5p

• Accession: MIMAT0013937
• Description: Sus scrofa ssc-miR-1306-5p mature miRNA
• Sequence: 8 - CCACCUCCCCUGCAAACGUCCA - 29
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-1306-3p

• Accession: MIMAT0013938
• Description: Sus scrofa ssc-miR-1306-3p mature miRNA
• Sequence: 48 - ACGUUGGCUCUGGUGGUGAUG - 68
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100