Stem-loop ssc-mir-222

Accession

MI0013151

Description

Sus scrofa ssc-mir-222 precursor miRNA

Literature search

41 open access papers mention ssc-mir-222
(91 sentences)

Sequence

3135794 reads, 1345.0 reads per million, 214 experiments

ugcccucaauggCUCAGUAGCCAGUGUAGAUCCUGucauuuguaaucaguAGCUACAUCUGGCUACUGGGUCUCugaugg
..((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))

Structure

ug  c   au              -     AUC   ucau 
  cc uca  ggCUCAGUAGCCAG UGUAG   CUG    u
  || |||  |||||||||||||| |||||   |||    u
  gg agu  CUGGGUCAUCGGUC ACAUC   gac    g
--  u   CU              U     GAu   uaau 

Annotation confidence Medium

Genome context

chrX: 45275613-45275692 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ssc-mir-222

Mature ssc-miR-222-5p

• Accession: MIMAT0052637
• Description: Sus scrofa ssc-miR-222-5p mature miRNA
• Sequence: 13 - CUCAGUAGCCAGUGUAGAUCCUG - 35
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-222-3p

• Accession: MIMAT0013942
• Description: Sus scrofa ssc-miR-222-3p mature miRNA
• Sequence: 51 - AGCUACAUCUGGCUACUGGGUCUC - 74
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100