Stem-loop ssc-mir-342

Accession

MI0013153

Description

Sus scrofa ssc-mir-342 precursor miRNA

Literature search

8 open access papers mention ssc-mir-342
(45 sentences)

Sequence

1311418 reads, 816.0 reads per million, 214 experiments

aaggugAGGGUGCUAUCUGUGACUGAGggacauggcgcauagaacugUCUCACACAGAAAUCGCACCCGUCAccuuggcc
(((((((((((((..((((((.....((((((...(.....)...)))))).))))))....)))))).)))))))....

Structure

----       -      --UA      ACUGA      ugg g 
    aaggugA GGGUGC    UCUGUG     Gggaca   c c
    ||||||| ||||||    ||||||     ||||||   | a
    uuccACU CCCACG    AGACAC     CUCUgu   g u
ccgg       G      CUAA      ----A      caa a 

Annotation confidence High

Genome context

Unknown

Mature ssc-miR-342-5p

• Accession: MIMAT0052638
• Description: Sus scrofa ssc-miR-342-5p mature miRNA
• Sequence: 7 - AGGGUGCUAUCUGUGACUGAG - 27
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-342-3p

• Accession: MIMAT0013944
• Description: Sus scrofa ssc-miR-342-3p mature miRNA
• Sequence: 48 - UCUCACACAGAAAUCGCACCCGUCA - 72
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100