Stem-loop ssc-mir-328

Accession

MI0013158

Description

Sus scrofa ssc-mir-328 precursor miRNA

Literature search

15 open access papers mention ssc-mir-328
(50 sentences)

Sequence

271089 reads, 279.0 reads per million, 205 experiments

ggagcgGGGGGGCAGGAGGGGCUCAGGGagaaagugugugccgcccCUGGCCCUCUCUGCCCUUCCGUcccccguuccug
((((((((((((((((.(((((.(((((.....(((.....))))))))))))).)))))).......))))))))))..

Structure

--          -------      A     U     agaaa   u 
  ggagcgGGGG       GGCAGG GGGGC CAGGG     gug g
  ||||||||||       |||||| ||||| |||||     ||| u
  ccuugccccc       CCGUCU UCCCG GUCcc     cgc g
gu          UGCCUUC      C     -     -----   c 

Annotation confidence Medium

Genome context

chr6: 25134077-25134156 [-]

Mature ssc-miR-328-5p

• Accession: MIMAT0052640
• Description: Sus scrofa ssc-miR-328-5p mature miRNA
• Sequence: 7 - GGGGGGCAGGAGGGGCUCAGGG - 28
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-328-3p

• Accession: MIMAT0013949
• Description: Sus scrofa ssc-miR-328-3p mature miRNA
• Sequence: 47 - CUGGCCCUCUCUGCCCUUCCGU - 68
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100