Stem-loop ssc-mir-628

Accession

MI0013163

Description

Sus scrofa ssc-mir-628 precursor miRNA

Sequence

46 reads, 39 reads per million, 7 experiments

gugucacuuccucAUGCUGACAUAUUUACUAGAGGguaaaguuaacaaccuUCUAGUAAGAGUGGCAGUCGAAGggaagg
......((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....)))))).

Structure

guguca      -cAU    A   A             aaag 
      cuuccu    GCUG CAU UUUACUAGAGGgu    u
      ||||||    |||| ||| |||||||||||||     
      gaaggG    UGAC GUG GAAUGAUCUucca    u
-----g      AAGC    G   A             acaa 

Annotation confidence Not enough data

Genome context

chr1: 129013474-129013553 [+]

Mature ssc-miR-628-5p

• Accession: MIMAT0013953
• Description: Sus scrofa ssc-miR-628-5p mature miRNA
• Sequence: 14 - AUGCUGACAUAUUUACUAGAGG - 35
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-628-3p

• Accession: MIMAT0037368
• Description: Sus scrofa ssc-miR-628-3p mature miRNA
• Sequence: 52 - UCUAGUAAGAGUGGCAGUCGAAG - 74
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252