Stem-loop ssc-mir-335

Accession

MI0013165

Description

Sus scrofa ssc-mir-335 precursor miRNA

Literature search

18 open access papers mention ssc-mir-335
(25 sentences)

Sequence

251391 reads, 635.0 reads per million, 212 experiments

cuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGuuugucauaaaccgUUUUUCAUUAUUGCUCCUGACCUccucuca
....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).))))

Structure

cuuu    c        A         C        u  gu 
    uggg gggggUCA GAGCAAUAA GAAAAAUG uu  c
    |||| |||||||| ||||||||| |||||||| ||   
    acuc ccUCCAGU CUCGUUAUU CUUUUUgc aa  a
----    u        C         A        c  au 

Annotation confidence High

Genome context

chr18: 19338000-19338079 [-]

Mature ssc-miR-335-5p

• Accession: MIMAT0013955
• Description: Sus scrofa ssc-miR-335-5p mature miRNA
• Sequence: 15 - UCAAGAGCAAUAACGAAAAAUG - 36
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-335-3p

• Accession: MIMAT0052644
• Description: Sus scrofa ssc-miR-335-3p mature miRNA
• Sequence: 51 - UUUUUCAUUAUUGCUCCUGACCU - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328