Stem-loop ssc-mir-324

Accession

MI0013167

Description

Sus scrofa ssc-mir-324 precursor miRNA

Literature search

8 open access papers mention ssc-mir-324
(14 sentences)

Sequence

140125 reads, 81.0 reads per million, 200 experiments

cuaugccucccCGCAUCCCCUAGGGCAUUGGUGUgaagcuggagacccACUGCCCCAGGUGCUGCUGGggguuguagucu
(((((.(((((.(((.(.(((.(((((.(((.((..........))))).))))).))).).))).))))).)))))...

Structure

---     c     C   U C   A     U   U  gaag 
   cuaug cuccc GCA C CCU GGGCA UGG GU    c
   ||||| ||||| ||| | ||| ||||| ||| ||     
   gaugu gggGG CGU G GGA CCCGU Acc ca    u
ucu     u     U   C U   C     C   -  gagg 

Annotation confidence High

Genome context

chr3: 139855128-139855207 [-]

Mature ssc-miR-324-5p

• Accession: MIMAT0013957
• Description: Sus scrofa ssc-miR-324-5p mature miRNA
• Sequence: 12 - CGCAUCCCCUAGGGCAUUGGUGU - 34
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-324-3p

• Accession: MIMAT0052645
• Description: Sus scrofa ssc-miR-324-3p mature miRNA
• Sequence: 49 - ACUGCCCCAGGUGCUGCUGG - 68
• Evidence: experimental ; Illumina [1-3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100