Stem-loop ssc-mir-129a

Accession

MI0013169

Description

Sus scrofa ssc-mir-129a precursor miRNA

Literature search

5 open access papers mention ssc-mir-129a
(8 sentences)

Sequence

12 reads, 18 reads per million, 7 experiments

cuucgugaauCUUUUUGCGGUCUGGGCUUGCuguacauaacucaauagccggAAGCCCUUACCCCAAAAAGCAUucgcgg
...((((((((((((((.(((..(((((((((((..........)))))...))))))..))).))))))).))))))).

Structure

cuu       -       C   CU      ---     acau 
   cgugaau CUUUUUG GGU  GGGCUU   GCugu    a
   ||||||| ||||||| |||  ||||||   |||||     
   gcgcuUA GAAAAAC CCA  CCCGAA   cgaua    a
--g       C       C   UU      ggc     acuc 

Annotation confidence Not enough data

Genome context

chr2: 20324630-20324709 [-]

Mature ssc-miR-129a-3p

• Accession: MIMAT0013959
• Description: Sus scrofa ssc-miR-129a-3p mature miRNA
• Sequence: 53 - AAGCCCUUACCCCAAAAAGCAU - 74
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-129a-5p

• Accession: MIMAT0032108
• Description: Sus scrofa ssc-miR-129a-5p mature miRNA
• Sequence: 11 - CUUUUUGCGGUCUGGGCUUGC - 31
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100