Stem-loop ssc-mir-455

Accession

MI0013170

Description

Sus scrofa ssc-mir-455 precursor miRNA

Literature search

4 open access papers mention ssc-mir-455
(8 sentences)

Sequence

199 reads, 119 reads per million, 11 experiments

uggcgugagggUAUGUGCCUUUGGACUACAUCGuggaagccagcaccauGCAGUCCAUGGGCAUAUACACuugccucaag
(((.(((((.((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).))))).)))..

Structure

--   c     g          U      A   C   gaa 
  ugg gugag gUAUGUGCCU UGGACU CAU Gug   g
  ||| ||||| |||||||||| |||||| ||| |||    
  acu cguuC CAUAUACGGG ACCUGA Gua cac   c
ga   c     A          U      C   c   gac 

Annotation confidence High

Genome context

chr1: 286017379-286017458 [+]

Mature ssc-miR-455-3p

• Accession: MIMAT0013960
• Description: Sus scrofa ssc-miR-455-3p mature miRNA
• Sequence: 50 - GCAGUCCAUGGGCAUAUACAC - 70
• Evidence: experimental ; Illumina [1-3]

Mature ssc-miR-455-5p

• Accession: MIMAT0022957
• Description: Sus scrofa ssc-miR-455-5p mature miRNA
• Sequence: 12 - UAUGUGCCUUUGGACUACAUCG - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100