Accession
MI0013300
Description
Citrus sinensis
csi-MIR169a precursor miRNA
Literature search
5 open access papers mention csi-MIR169a
(15 sentences)
(15 sentences)
Sequence
aucaagugcuaccuuauauauagaaagaauaacaaagguuggaaauuggucuaggguuucuuauaugaagggacagguagaggaucuaGAGCCAAGAAUGACUUGCCGAcggcauugaccauaauaucauacggcaggccauucuugucucaacuccgcucucuaucuucucaucugagacucucggacacugacaaccaaccucagcaaugcagcaccagaugauucuuucuauucucaggugaucuaugauacuauguucaucuaaugagcucugcgucacauuuuuauuuuucccccauuuuucugacuucuccuccuugagccauuuuuccggauccaugaacaguacaaaaucucuauuacaaccaacagaguuaagcaaugcuguucuuaaugauaagcuuauuuuaggguggcauauauuuugcaauaaucuaguuagaaauaauuaaaaguuuuuucuuggagcuuuggcguuucuccuugcauuuguacaaccuuuuaugcaaacaguuguagaauuggggaugacacaaucuuugguuggagugugauuuuaugcuguauuuauuaugcacacaauagcgggcucgucgauccacuguucaugcaagaacuggagcgaaggaauagauagcuugauuaucgaacaaauuaaaauaauuaaucgugcaucaauuuugacaaggagugaggaaccucuccucaucugcauuaucaugaaauuuuaauaauuuuguacauagc
((((((..(.((((.....(((((((((((.....(((((((.....(((((((((((((....((((.((((.(((.((.(((....(((.((((((((.((((((((.((.((((....)))).)).).))))))).)))))))).)))...))).)).))).)))).))))..)))))))).)))).)......)))))))..((......))........)))))))))))....)))))..)).)))).((((((.......((((((.(((((((((((((.........(((((..(((((((((..((((...(((((((((.............((((((((......((((.((......)).))))........))))))))..))))....)))))....))))..(((.......)))........)))))))))......((((((((.....)))))))).(((........)))..((.((((((..(((....)))..)))))).)).)))))......(((((...))))))))))))))....((.(((((.....))))))).....))))))))))((.((((..((((......)))))))).))..(((((.(((.((.((((((...................)))))).))))).))))).....(.((((((((.....)))))).)).)......((((((((.....)))))))))))))).
((((((..(.((((.....(((((((((((.....(((((((.....(((((((((((((....((((.((((.(((.((.(((....(((.((((((((.((((((((.((.((((....)))).)).).))))))).)))))))).)))...))).)).))).)))).))))..)))))))).)))).)......)))))))..((......))........)))))))))))....)))))..)).)))).((((((.......((((((.(((((((((((((.........(((((..(((((((((..((((...(((((((((.............((((((((......((((.((......)).))))........))))))))..))))....)))))....))))..(((.......)))........)))))))))......((((((((.....)))))))).(((........)))..((.((((((..(((....)))..)))))).)).)))))......(((((...))))))))))))))....((.(((((.....))))))).....))))))))))((.((((..((((......)))))))).))..(((((.(((.((.((((((...................)))))).))))).))))).....(.((((((((.....)))))).)).)......((((((((.....)))))))))))))).
Structure
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- - ug u uauau ---------------aacaa -aaauu - - uuau a c u a ucua C A - c c a
auca ag c accu auagaaagaau agguugg g gucu aggguuuc auga ggga agg ag gga GAG CAAGAAUG CUUGCCG A gg auug c
|||| || | |||| ||||||||||| ||||||| | |||| |||||||| |||| |||| ||| || ||| ||| |||||||| ||||||| | || ||||
uagu uc g ugga uaucuuucuua uccaacc c cagg ucucagag uacu uucu ucu uc ccu cuc guucuuac ggacggc u cu uaau c
cgauacauguuuuaauaauuuuaaaguacuauuacgucuacuccucuccaaggagugaggaacaguuuuaacuacgugcuaauuaauaaaauuaaacaagcuauuaguucgauagauaaggaagcgaggucaagaacguacuugucaccuagcugcucgggcgauaacacacguauuauuuaugucguauuuuagugugagguugguuucuaacacaguagggguuaagauguugacaaacguauuuuccaacauguuuacguuccucuuugcgguuucgagguucuuuuuugaaaauuaauaaagauugaucuaauaacguuuuauauacggugggauuuuauucgaauaguaauucuugucguaacgaauugagacaaccaacauuaucucuaaaacaugacaaguaccuaggccuuuuuaccgaguuccuccucuucagucuuuuuacccccuuuuuauuuuuacacugcgucucgaguaaucuacuuguauca a ua - -cucu guagaccacgacguaacgac aacagu a c --uc c a c g -caa u c a a a a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr4: 2089053-2089802 [-]
Database links
Mature csi-miR169a
| Accession | MIMAT0014074 |
| Description | Citrus sinensis csi-miR169a mature miRNA |
| Sequence | 89 - GAGCCAAGAAUGACUUGCCGA - 109 |
| Evidence |
experimental
Northern [1], Illumina [2] |
References
|
