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MicroRNA annotation of plant genomes - Do it right or not at all |
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|---|---|
| PubMed ID | 28054378 |
| Authors | "Taylor RS, Tarver JE, Foroozani A, Donoghue PC" |
| Journal | Bioessays |
| Volume | 39 |
| Pages | 1600113 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| csi-MIR160a | MI0013294 | None | chr7 | 28083438 | 28083580 | - | High |
| csi-MIR164a | MI0013295 | None | chr6 | 11293723 | 11293961 | + | High |
| csi-MIR166e | MI0013296 | None | JH999119.1 | 2541222 | 2541398 | + | High |
| csi-MIR169a | MI0013300 | None | chr4 | 2089053 | 2089802 | - | - |
| csi-MIR172a | MI0013302 | None | chr1 | 27309962 | 27310123 | - | High |
| csi-MIR398a | MI0013305 | None | chr7 | 1333347 | 1333571 | + | High |
| csi-MIR162 | MI0013314 | None | JH999183.1 | 24505 | 24704 | + | High |
| csi-MIR166a | MI0013315 | None | chr5 | 444262 | 444463 | - | High |
| csi-MIR390a | MI0013317 | None | chr6 | 11038360 | 11038515 | + | High |
| csi-MIR156a | MI0016691 | None | chr4 | 392462 | 392564 | + | High |
| csi-MIR159a | MI0016693 | None | chr5 | 31258923 | 31259134 | - | High |
| csi-MIR166c | MI0016694 | None | chr5 | 32146390 | 32146527 | + | High |
| csi-MIR167c | MI0016696 | None | chr2 | 8234791 | 8235131 | + | High |
| csi-MIR167b | MI0016697 | None | chr9 | 4850348 | 4850470 | + | High |
| csi-MIR171b | MI0016698 | None | JH999127.1 | 105690 | 105857 | + | High |
| csi-MIR171a | MI0016699 | None | chr2 | 18395485 | 18395580 | + | Medium |
| csi-MIR172c | MI0016701 | None | chr7 | 31488799 | 31488961 | + | Medium |
| csi-MIR159d | MI0016702 | None | chr4 | 17295819 | 17295941 | + | - |
| csi-MIR393a | MI0016703 | None | chr2 | 28763391 | 28763535 | - | High |
| csi-MIR394a | MI0016704 | None | chr3 | 27992160 | 27992306 | + | - |
| csi-MIR395a | MI0016705 | None | chr5 | 25578967 | 25579066 | - | - |
| csi-MIR396a | MI0016706 | None | chr7 | 3041218 | 3041370 | - | Medium |
| csi-MIR396b | MI0016707 | None | chr4 | 3335321 | 3335454 | + | Medium |
| csi-MIR397 | MI0016708 | None | chr2 | 4101151 | 4101306 | - | High |
| csi-MIR399c | MI0016710 | None | chr2 | 2303898 | 2304046 | - | - |
| csi-MIR399d | MI0016711 | None | chr9 | 15383353 | 15383482 | + | High |
| csi-MIR399a | MI0016712 | None | chr2 | 2292782 | 2292936 | + | - |
| csi-MIR399b | MI0016713 | None | chr5 | 7022847 | 7023016 | - | Medium |
| csi-MIR403a | MI0016714 | None | JH999133.1 | 404979 | 405108 | - | Medium |
| csi-MIR408 | MI0016715 | None | JH999133.1 | 795393 | 795545 | - | High |
| csi-MIR482f | MI0016716 | None | chr2 | 9962813 | 9962906 | + | High |
| csi-MIR477c | MI0016717 | None | None | None | High | ||
| csi-MIR477a | MI0016718 | None | chr7 | 15360858 | 15360997 | - | High |
| csi-MIR477b | MI0016719 | None | chr7 | 9419304 | 9419441 | + | Medium |
| csi-MIR482a | MI0016722 | None | chr2 | 9941395 | 9941523 | + | High |
| csi-MIR482b | MI0016723 | None | chr2 | 9932506 | 9932614 | + | High |
| csi-MIR530a | MI0016724 | None | chr8 | 18992462 | 18992582 | + | High |
| csi-MIR530b | MI0016725 | None | chr8 | 18976494 | 18976647 | - | High |
| csi-MIR827 | MI0016727 | None | JH999145.1 | 323612 | 323711 | + | High |
| csi-MIR3951a | MI0016734 | None | chr4 | 7896098 | 7896245 | - | High |
| csi-MIR3952 | MI0016736 | None | chr8 | 16164905 | 16165067 | + | High |
| csi-MIR482c | MI0016737 | None | chr2 | 9927230 | 9927325 | + | High |
| csi-MIR167a | MI0016740 | None | chr3 | 14951537 | 14951639 | + | High |
| csi-MIR156b | MI0039615 | None | chr7 | 3637037 | 3637179 | + | Low |
| csi-MIR156c | MI0039616 | None | chr4 | 3430774 | 3430922 | - | High |
| csi-MIR156d | MI0039617 | None | chr2 | 10012779 | 10012879 | + | - |
| csi-MIR156e | MI0039618 | None | chr7 | 24974743 | 24974889 | - | High |
| csi-MIR156f | MI0039619 | None | chr4 | 5738174 | 5738319 | - | High |
| csi-MIR156g | MI0039620 | None | chr6 | 18413895 | 18414036 | - | High |
| csi-MIR159b | MI0039621 | None | chr1 | 9887739 | 9887888 | - | High |
| csi-MIR159c | MI0039622 | None | chr5 | 1270908 | 1271096 | + | High |
| csi-MIR160b | MI0039623 | None | chr2 | 7769210 | 7769352 | + | High |
| csi-MIR160c | MI0039624 | None | chr6 | 12796053 | 12796156 | - | High |
| csi-MIR164b | MI0039625 | None | chr5 | 34323052 | 34323202 | - | High |
| csi-MIR164c | MI0039626 | None | chr3 | 18768832 | 18768973 | + | High |
| csi-MIR166b | MI0039627 | None | chr3 | 4882349 | 4882498 | + | High |
| csi-MIR166d | MI0039628 | None | JH999146.1 | 206472 | 206599 | + | Medium |
| csi-MIR166f | MI0039629 | None | chr3 | 4882188 | 4882340 | + | High |
| csi-MIR166g | MI0039630 | None | chr9 | 5710567 | 5710700 | - | High |
| csi-MIR166h | MI0039631 | None | JH999128.1 | 611054 | 611179 | + | High |
| csi-MIR166i | MI0039632 | None | JH999128.1 | 611296 | 611395 | + | - |
| csi-MIR166j | MI0039633 | None | JH999128.1 | 425836 | 425968 | + | High |
| csi-MIR166k | MI0039634 | None | JH999128.1 | 426072 | 426186 | + | High |
| csi-MIR167d | MI0039635 | None | chr5 | 32492102 | 32492188 | - | Medium |
| csi-MIR167e | MI0039636 | None | chr5 | 32495360 | 32495526 | - | High |
| csi-MIR169b | MI0039637 | None | chr7 | 1152858 | 1153060 | - | - |
| csi-MIR169c | MI0039638 | None | chr2 | 10985954 | 10986108 | + | High |
| csi-MIR169d | MI0039639 | None | chr2 | 11047192 | 11047344 | + | High |
| csi-MIR169e | MI0039640 | None | chr2 | 11051619 | 11051777 | + | High |
| csi-MIR169f | MI0039641 | None | chr6 | 14255727 | 14255899 | - | High |
| csi-MIR169g | MI0039642 | None | chr7 | 1615803 | 1616008 | - | High |
| csi-MIR169h | MI0039643 | None | chr2 | 11006174 | 11006335 | + | - |
| csi-MIR169i | MI0039644 | None | chr2 | 11046938 | 11047093 | + | - |
| csi-MIR169j | MI0039645 | None | chr2 | 27132069 | 27132221 | + | - |
| csi-MIR169k | MI0039646 | None | chr6 | 20609191 | 20609372 | + | - |
| csi-MIR169l | MI0039647 | None | chr2 | 10938344 | 10938498 | + | High |
| csi-MIR169m | MI0039648 | None | chr9 | 1732704 | 1732880 | + | High |
| csi-MIR169n | MI0039649 | None | chr7 | 4557016 | 4557094 | - | High |
| csi-MIR171c | MI0039650 | None | JH999147.1 | 178217 | 178354 | + | High |
| csi-MIR171d | MI0039651 | None | chr3 | 27933094 | 27933232 | - | - |
| csi-MIR171e | MI0039652 | None | chr2 | 18268665 | 18268808 | + | High |
| csi-MIR171f | MI0039653 | None | chr1 | 28277765 | 28277922 | + | High |
| csi-MIR171g | MI0039654 | None | AJPS01013894.1 | 754 | 897 | - | High |
| csi-MIR171h | MI0039655 | None | chr2 | 24735623 | 24735721 | + | - |
| csi-MIR171i | MI0039656 | None | chr2 | 1312646 | 1312748 | + | High |
| csi-MIR172b | MI0039657 | None | chr7 | 24627515 | 24627705 | + | High |
| csi-MIR172d | MI0039658 | None | chr8 | 21300353 | 21300511 | + | Medium |
| csi-MIR390b | MI0039659 | None | chr8 | 22527260 | 22527418 | + | High |
| csi-MIR393b | MI0039660 | None | chr9 | 16703306 | 16703479 | - | High |
| csi-MIR393c | MI0039661 | None | chr7 | 31959511 | 31959653 | + | High |
| csi-MIR394b | MI0039662 | None | JH999157.1 | 292152 | 292253 | - | - |
| csi-MIR395b | MI0039663 | None | chr7 | 2081126 | 2081246 | - | - |
| csi-MIR395c | MI0039664 | None | chr5 | 25604742 | 25604872 | - | - |
| csi-MIR396d | MI0039665 | None | chr9 | 4490369 | 4490532 | + | Medium |
| csi-MIR396e | MI0039666 | None | chr7 | 10780729 | 10780898 | - | High |
| csi-MIR396f | MI0039667 | None | chr4 | 3340888 | 3341059 | - | High |
| csi-MIR398b | MI0039668 | None | chr2 | 28957195 | 28957316 | + | Medium |
| csi-MIR399e | MI0039669 | None | chr2 | 2305516 | 2305646 | + | - |
| csi-MIR399f | MI0039670 | None | chr2 | 2298474 | 2298644 | - | - |
| csi-MIR403b | MI0039671 | None | chr9 | 719780 | 719884 | + | Medium |
| csi-MIR477d | MI0039672 | None | chr5 | 1064087 | 1064188 | - | High |
| csi-MIR477e | MI0039673 | None | chr5 | 1063882 | 1063974 | - | High |
| csi-MIR482d | MI0039674 | None | chr6 | 1186417 | 1186589 | + | Medium |
| csi-MIR535b | MI0039675 | None | chr2 | 14795671 | 14795811 | - | High |
| csi-MIR535c | MI0039676 | None | chr2 | 14868303 | 14868443 | - | High |
| csi-MIR858 | MI0039677 | None | chr2 | 13416109 | 13416185 | + | - |
| csi-MIR2275a | MI0039678 | None | chr6 | 20307148 | 20307280 | + | - |
| csi-MIR2275b | MI0039679 | None | JH999163.1 | 326415 | 326598 | + | - |
| csi-MIR3627a | MI0039680 | None | chr6 | 19940722 | 19940874 | - | High |
| csi-MIR3627b | MI0039681 | None | chr6 | 19944464 | 19944728 | + | - |
| csi-MIR3627c | MI0039682 | None | chr6 | 19939025 | 19939147 | + | High |
| csi-MIR391 | MI0039683 | None | chr8 | 19876125 | 19876265 | - | - |
| csi-MIR1515b | MI0039684 | None | chr1 | 22746989 | 22747162 | + | Low |
| csi-MIR3952b | MI0039685 | None | chr8 | 15996993 | 15997192 | + | Medium |
| csi-MIR3954b | MI0039686 | None | chr9 | 5824724 | 5824960 | - | Medium |
| csi-MIR12105 | MI0039687 | None | chr3 | 13421634 | 13421835 | - | Low |
| csi-MIR536 | MI0039688 | None | chr7 | 1201524 | 1201659 | - | High |
| csi-MIR12106 | MI0039689 | None | chr2 | 4660197 | 4660296 | - | Medium |
| csi-MIR12107 | MI0039690 | None | chr4 | 1005818 | 1005978 | + | High |
| csi-MIR482e | MI0039692 | None | chr2 | 9926991 | 9927153 | + | High |
| csi-MIR12108 | MI0039694 | None | JH999167.1 | 85093 | 85283 | + | Medium |
| csi-MIR12109 | MI0039695 | None | chr7 | 23942692 | 23942812 | + | High |
| csi-MIR9560 | MI0039696 | None | chr3 | 18990552 | 18990654 | - | - |
| csi-MIR12110 | MI0039697 | None | chr9 | 17616672 | 17616775 | - | - |
| csi-MIR12111 | MI0039698 | None | chr5 | 8697594 | 8697743 | - | High |
| csi-MIR168 | MI0039699 | None | JH999176.1 | 244098 | 244274 | + | High |
| csi-MIR482g | MI0039700 | None | chr2 | 9942925 | 9943053 | + | High |
| csi-MIR156h | MI0039701 | None | chr2 | 10039848 | 10039948 | + | - |
| csi-MIR156i | MI0039702 | None | chr2 | 10067141 | 10067241 | + | - |
| csi-MIR156j | MI0039703 | None | chr2 | 10333819 | 10333930 | + | High |
| csi-MIR164d | MI0039704 | None | chr5 | 34323478 | 34323628 | - | High |
| csi-MIR169o | MI0039705 | None | chr7 | 4557214 | 4557309 | - | Medium |
| csi-MIR169p | MI0039706 | None | chr2 | 10984178 | 10984294 | + | - |
| csi-MIR169q | MI0039707 | None | chr6 | 14238837 | 14238963 | - | - |
| csi-MIR535d | MI0039708 | None | chr2 | 14852789 | 14852929 | - | High |
| csi-MIR535e | MI0039709 | None | chr2 | 14823918 | 14824011 | - | High |
| csi-MIR535f | MI0039710 | None | None | None | High | ||
| csi-MIR2111 | MI0039711 | None | chr6 | 8971653 | 8971760 | - | High |
| csi-MIR3951b | MI0039712 | None | chr4 | 7871758 | 7871883 | - | High |
| csi-MIR169r | MI0039713 | None | None | None | - |