Stem-loop csi-MIR172d

Accession

MI0039658

Description

Citrus sinensis csi-MIR172d precursor miRNA

Literature search

5 open access papers mention csi-MIR172d
(15 sentences)

Sequence

2799 reads, 120.0 reads per million, 16 experiments

aagagcuagcugcugccaauauuugcgguuGCGGCAUCAUCAAGAUUCACAagcuuuagcaagggaauucauugaauaggccuauucaaaaguuccuuccaaauaauggGAAUCUUGAUGAUGCUGCAUcagcaaauauuugacuacgauucauaccac
...(((.....)))...(((((((((...(((((((((((((((((((....((....)).((((((((..(((((((....))))))).))))))))(((.....))))))))))))))))))))))...)))))))))...................

Structure

--aagagcuagcugcugcc         ggu                   ACAagcuuuagca        ca       g 
                   aauauuugc   uGCGGCAUCAUCAAGAUUC             agggaauu  uugaaua g
                   |||||||||   |||||||||||||||||||             ||||||||  |||||||  
                   uuauaaacg   ACGUCGUAGUAGUUCUAAG             uuccuuga  aacuuau c
caccauacuuagcaucagu         acU                   --gguaauaaacc        -a       c 

Annotation confidence Medium

Genome context

chr8: 21300353-21300511 [+]

Mature csi-miR172d-5p

• Accession: MIMAT0048917
• Description: Citrus sinensis csi-miR172d-5p mature miRNA
• Sequence: 31 - GCGGCAUCAUCAAGAUUCACA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR172d-3p

• Accession: MIMAT0057187
• Description: Citrus sinensis csi-miR172d-3p mature miRNA
• Sequence: 110 - GAAUCUUGAUGAUGCUGCAU - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113