Stem-loop csi-MIR3951a

Accession

MI0016734

Description

Citrus sinensis csi-MIR3951a precursor miRNA

Literature search

1 open access papers mention csi-MIR3951a
(3 sentences)

Sequence

cauaagaggagugcuuggcaUAGAUAAAGAUGAGAGAAAAAuaugagagaaagaugagagaaauuuguucccucuacacccacccacucucucuucucuuuucuucuuUUUCUCUUAUCGUUAUCUGUgcuuagcauuuuucuucgau
...((((((((((((.(((((((((((.(((((((((((((...((((((((((.((((((..........................)))))).))).))))))).))))))))))))).))))))))))).))))))))))))....

Structure

-cau            u           A             uau       -   u      aauuuguucccu 
    aagaggagugcu ggcaUAGAUAA GAUGAGAGAAAAA   gagagaa aga gagaga            c
    |||||||||||| ||||||||||| |||||||||||||   ||||||| ||| ||||||             
    uucuuuuuacga ucgUGUCUAUU CUAUUCUCUUUuu   uucuuuu ucu cucucu            u
uagc            u           G             --c       c   u      cacccacccaca 

Annotation confidence Not enough data

Genome context

chr4: 7896098-7896245 [-]

Mature csi-miR3951a-5p

• Accession: MIMAT0018492
• Description: Citrus sinensis csi-miR3951a-5p mature miRNA
• Sequence: 21 - UAGAUAAAGAUGAGAGAAAAA - 41
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR3951a-3p

• Accession: MIMAT0037414
• Description: Citrus sinensis csi-miR3951a-3p mature miRNA
• Sequence: 109 - UUUCUCUUAUCGUUAUCUGU - 128
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113